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Revision as of 23:35, 6 November 2017
Welcome to the HPC Wiki for the Bioinformatics research group at Aberystwyth University. The aim of this wiki is to allow researchers in the field of Bioinformatics in IBERS at Aberystwyth to document common tasks using the High Performance Computing cluster.
Contents
Editing this Wiki
Please email ibers-cs@aber.ac.uk to ask for access to edit this wiki.
Troubleshooting
Please read these sections if you are having trouble. There is a chance that you can resolve the problem on your own and ask for help more effectively otherwise. Some (most) of these ideas are shamelessly taken from the stackoverflow help pages.
Minimal, Verifiable, Complete example
IBERS HPC Guides
Overview
Using the HPC
Tools to access the HPC
Slides and Talks
Special HPC Workflows
Other Services
Best Practice
Tutorials
RNA Seq on HPC (using Trinity)
Workarounds
Your software/script uses threads and works locally, but crashes if run under the SGE's queue
