Difference between revisions of "Complex submissions"
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| − | In | + | In [[Submitting your job using SGE]] we looked at the following script; |
<nowiki> | <nowiki> | ||
| − | #specify the shell type | + | #specify the shell type |
| − | #$ -S /bin/sh | + | #$ -S /bin/sh |
| − | #run in the current working directory | + | #run in the current working directory |
| − | #$ -cwd | + | #$ -cwd |
| − | #specify that the job will be killed if it uses over 40G or total memory or run for more than 24hours. | + | #specify that the job will be killed if it uses over 40G or total memory or run for more than 24hours. |
| − | #indicate that the program should run for 1 hour and use 20G of total memory | + | #indicate that the program should run for 1 hour and use 20G of total memory |
| − | #$ -l s_vmem=20G h_vmem=40G s_rt=360 h_rt=3600 | + | #$ -l s_vmem=20G h_vmem=40G s_rt=360 h_rt=3600 |
| − | #specify the number of cores required | + | #specify the number of cores required |
| − | #$ -pe mpich 1 | + | #$ -pe mpich 1 |
| − | #specify which queue you wish to use | + | #specify which queue you wish to use |
| − | #$ -q amd.q | + | #$ -q amd.q |
| − | #run a program command to print hostname and uptime | + | #run a program command to print hostname and uptime |
| − | hostname && uptime | + | hostname && uptime |
</nowiki> | </nowiki> | ||
Revision as of 11:04, 1 May 2012
In Submitting your job using SGE we looked at the following script;
#specify the shell type #$ -S /bin/sh #run in the current working directory #$ -cwd #specify that the job will be killed if it uses over 40G or total memory or run for more than 24hours. #indicate that the program should run for 1 hour and use 20G of total memory #$ -l s_vmem=20G h_vmem=40G s_rt=360 h_rt=3600 #specify the number of cores required #$ -pe mpich 1 #specify which queue you wish to use #$ -q amd.q #run a program command to print hostname and uptime hostname && uptime
