Difference between revisions of "Complex submissions"
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In [[Submitting your job using SGE]] we looked at the following script; | In [[Submitting your job using SGE]] we looked at the following script; | ||
| − | <nowiki> | + | <nowiki> |
| − | + | #specify the shell type | |
| − | + | #$ -S /bin/sh | |
| − | + | #run in the current working directory | |
| − | + | #$ -cwd | |
| − | + | #specify that the job will be killed if it uses over 40G or total memory or run for more than 24hours. | |
| − | + | #indicate that the program should run for 1 hour and use 20G of total memory | |
| − | + | #$ -l s_vmem=20G h_vmem=40G s_rt=360 h_rt=3600 | |
| − | + | #specify the number of cores required | |
| − | + | #$ -pe mpich 1 | |
| − | + | #specify which queue you wish to use | |
| − | + | #$ -q amd.q | |
| − | + | #run a program command to print hostname and uptime | |
| − | + | hostname && uptime | |
| − | </nowiki> | + | </nowiki> |
Revision as of 11:05, 1 May 2012
In Submitting your job using SGE we looked at the following script;
#specify the shell type
#$ -S /bin/sh
#run in the current working directory
#$ -cwd
#specify that the job will be killed if it uses over 40G or total memory or run for more than 24hours.
#indicate that the program should run for 1 hour and use 20G of total memory
#$ -l s_vmem=20G h_vmem=40G s_rt=360 h_rt=3600
#specify the number of cores required
#$ -pe mpich 1
#specify which queue you wish to use
#$ -q amd.q
#run a program command to print hostname and uptime
hostname && uptime
