Difference between revisions of "RNA Seq on HPC (using Trinity)"
(Created page with " 1. Read Quality Assessment ") |
|||
| Line 1: | Line 1: | ||
[[ 1. Read Quality Assessment ]] | [[ 1. Read Quality Assessment ]] | ||
| + | |||
| + | [[ 2. Quality trimming ]] | ||
| + | |||
| + | [[ 3. In silico read normalisation ]] | ||
| + | |||
| + | [[ 4. Running Trinity]] | ||
| + | |||
| + | [[ 5. Evaluating the assembly ]] | ||
| + | |||
| + | [[ 6. Abundance estimation using RSEM ]] | ||
| + | |||
| + | [[ 7. Construct an expression matrix ]] | ||
| + | |||
| + | [[ 8. Evaluating the assembly with ExN50 ]] | ||
| + | |||
| + | [[ 9. Expression analysis ]] | ||
