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- 1.1 RNA-Seq analysis tools
- 1. Introduction
- 1. Read Quality Assessment
- 10. Useful references
- 2. Quality trimming
- 2. Your environment
- 26th July 2013
- 3.Identification and masking of repeat elements
- 3. Running Trinity
- 3. Your data
- 3. Your environment
- 4.Identification and masking of repeat elements
- 4. Evaluating the assembly
- 4. Quality control
- 4. Your data
- 5.Identification and masking of repeat elements
- 5. Transcript expression quantitation
- 5. Trimming
- 6.1 Genome indexing for bowtie
- 6.2 Read mapping using tophat