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- Module Environment (08:42, 20 April 2012)
- Quick start (08:43, 16 October 2012)
- UNIX Graphical interface (09:38, 18 July 2013)
- Meeting minutes (14:21, 5 August 2013)
- Active Perl (15:25, 6 August 2013)
- Running BLAST optimally (14:41, 7 August 2013)
- 26th July 2013 (09:05, 14 August 2013)
- Use scratch space (11:36, 23 August 2013)
- SPRINT (11:43, 4 November 2013)
- Available Software (10:46, 11 November 2013)
- Blast2go (14:02, 14 May 2014)
- Blast (10:36, 9 July 2014)
- What is a HPC (13:56, 14 July 2014)
- Nodes, Cores, Slots (14:28, 14 July 2014)
- Scheduling and queuing (10:20, 15 July 2014)
- Matlab (11:22, 13 August 2015)
- 1.1 RNA-Seq analysis tools (21:00, 24 January 2016)
- 3. Your data (15:25, 25 January 2016)
- 2. Your environment (15:35, 25 January 2016)
- 4. Quality control (15:26, 27 January 2016)
- 5. Trimming (10:51, 4 February 2016)
- 6.2 Read mapping using tophat (15:55, 12 February 2016)
- 6.4 Differential Expression using cuffdiff (10:48, 18 February 2016)
- 6.3 Transcriptome reconstruction and expression using cufflinks (10:58, 18 February 2016)
- RNA Seq on HPC (15:32, 20 February 2016)
- 9. Using bwa for read mapping and SNP calling (15:44, 20 February 2016)
- 9.1 Genome indexing for bwa (15:59, 20 February 2016)
- 9.2 Read mapping using bwa (16:07, 20 February 2016)
- 10. Useful references (16:39, 20 February 2016)
- 7. Using STAR for read mapping (16:40, 20 February 2016)
- 6. The tuxedo pipeline (13:32, 22 February 2016)
- 8. De novo assembly with Velvet (16:30, 22 February 2016)
- 9.3 SNP calling using varscan (14:40, 25 February 2016)
- Progressive Cactus (11:02, 1 March 2016)
- 3.Identification and masking of repeat elements (16:51, 19 March 2016)
- 3. Your environment (16:58, 19 March 2016)
- 4.Identification and masking of repeat elements (16:59, 19 March 2016)
- Genome Annotation (17:03, 19 March 2016)
- 4. Your data (17:17, 19 March 2016)
- 5.Identification and masking of repeat elements (17:26, 19 March 2016)
- 1. Introduction (11:19, 21 March 2016)
- 6.1 Genome indexing for bowtie (13:12, 11 May 2016)
- Convert fasta to 1l fasta.sh (17:10, 3 October 2016)
- Orthomcl.config (17:22, 3 October 2016)
- OrthoMCL (17:30, 3 October 2016)
- 1. Read Quality Assessment (14:11, 6 March 2017)
- 2. Quality trimming (14:24, 6 March 2017)
- 3. Running Trinity (14:45, 6 March 2017)
- 4. Evaluating the assembly (14:50, 6 March 2017)
- RNA Seq on HPC (using Trinity) (14:50, 6 March 2017)