User contributions
- 10:41, 23 June 2017 (diff | hist) . . (+15) . . Diamond Blast (→Step 4: BLAST like in BLAST.) (current)
- 15:49, 21 June 2017 (diff | hist) . . (+4) . . Diamond Blast (→Step 4: BLAST like in BLAST.)
- 15:48, 21 June 2017 (diff | hist) . . (+5) . . Diamond Blast (→Step 4: BLAST like in BLAST.)
- 15:48, 21 June 2017 (diff | hist) . . (+20) . . Diamond Blast (→Step 4: BLAST like in BLAST.)
- 15:47, 21 June 2017 (diff | hist) . . (+8) . . Diamond Blast (→Step 1: Gather sequences)
- 15:46, 21 June 2017 (diff | hist) . . (+7) . . Diamond Blast (→Step 1: Gather sequences)
- 15:45, 21 June 2017 (diff | hist) . . (-6) . . Diamond Blast (→Extra optional Step 6: Summarise results)
- 15:45, 21 June 2017 (diff | hist) . . (0) . . Diamond Blast (→Step 5: Transform the .daa file into a tabular readable format)
- 15:44, 21 June 2017 (diff | hist) . . (+2) . . Diamond Blast (→Step 4: BLAST like in BLAST.)
- 15:43, 21 June 2017 (diff | hist) . . (+3) . . Diamond Blast (→Step 4: BLAST like in BLAST.)
- 15:42, 21 June 2017 (diff | hist) . . (-11) . . Diamond Blast (→Step3 : Create a database.)
- 15:42, 21 June 2017 (diff | hist) . . (+19) . . Diamond Blast (→Step3 : Create a database.)
- 15:41, 21 June 2017 (diff | hist) . . (+1) . . Diamond Blast (→Step 4: BLAST like in BLAST.)
- 15:40, 21 June 2017 (diff | hist) . . (-5) . . Diamond Blast (→Step3 : Create a database.)
- 15:39, 21 June 2017 (diff | hist) . . (-2) . . Diamond Blast (→Step 2: get the Diamond suite.)
- 15:38, 21 June 2017 (diff | hist) . . (+53) . . Diamond Blast (This Tutorial will explain how to run Diamond Blast)
- 15:37, 21 June 2017 (diff | hist) . . (-16) . . Main Page (→Special HPC Workflows)
- 15:36, 21 June 2017 (diff | hist) . . (+16) . . Main Page (→Special HPC Workflows)
- 15:35, 21 June 2017 (diff | hist) . . (-43) . . Diamond Blast (→How to run BLAST with DIAMOND)
- 15:34, 21 June 2017 (diff | hist) . . (+2,419) . . N Diamond Blast (Created page with "== '''How to run BLAST with DIAMOND''' == == Step 1: Gather sequences == ... for what will be the "database" (for instance, all ortholog sequences downloaded from Ensembl, ...")
- 15:23, 21 June 2017 (diff | hist) . . (+19) . . Main Page (→Special HPC Workflows)
- 17:30, 3 October 2016 (diff | hist) . . (+16) . . OrthoMCL (→all vs all BLAST) (current)
- 17:27, 3 October 2016 (diff | hist) . . (+1) . . OrthoMCL (→MCL clustering step:)
- 17:22, 3 October 2016 (diff | hist) . . (+46) . . Orthomcl.config (→Orthomcl.config) (current)
- 17:21, 3 October 2016 (diff | hist) . . (+82) . . Orthomcl.config (→Orthomcl.config)
- 17:20, 3 October 2016 (diff | hist) . . (-7) . . Orthomcl.config (→Orthomcl.config)
- 17:19, 3 October 2016 (diff | hist) . . (+582) . . N Orthomcl.config (Created page with "==Orthomcl.config== This is an example of an "orthomcl.config" file that ran in mysql. # this config assumes a mysql database named 'orthomcl'. adjust according # to yo...")
- 17:14, 3 October 2016 (diff | hist) . . (-4) . . OrthoMCL (→MCL clustering step:)
- 17:12, 3 October 2016 (diff | hist) . . (+14) . . Main Page (→Special HPC Workflows)
- 17:11, 3 October 2016 (diff | hist) . . (+34) . . Main Page (→Workarounds)
- 17:10, 3 October 2016 (diff | hist) . . (+619) . . N Convert fasta to 1l fasta.sh (convert_fasta_to_1l_fasta.sh) (current)
- 17:05, 3 October 2016 (diff | hist) . . (+2) . . OrthoMCL (→all vs all BLAST)
- 17:03, 3 October 2016 (diff | hist) . . (+127) . . OrthoMCL (→all vs all BLAST)
- 16:54, 3 October 2016 (diff | hist) . . (0) . . OrthoMCL (→MCL clustering step:)
- 16:54, 3 October 2016 (diff | hist) . . (+177) . . OrthoMCL (→MCL clustering step:)
- 16:49, 3 October 2016 (diff | hist) . . (+11) . . OrthoMCL (→In the Virtual Machine...)
- 16:41, 3 October 2016 (diff | hist) . . (+4) . . OrthoMCL (→all vs all BLAST)
- 16:40, 3 October 2016 (diff | hist) . . (-2) . . OrthoMCL (→all vs all BLAST)
- 16:39, 3 October 2016 (diff | hist) . . (+2) . . OrthoMCL (→all vs all BLAST)
- 16:35, 3 October 2016 (diff | hist) . . (+1,620) . . OrthoMCL (→In the server...)
- 15:17, 3 October 2016 (diff | hist) . . (-11) . . OrthoMCL (→In the server...)
- 15:02, 3 October 2016 (diff | hist) . . (+5) . . OrthoMCL (→Using orthoMCL)
- 15:01, 3 October 2016 (diff | hist) . . (-6) . . OrthoMCL (→Using orthoMCL)
- 14:55, 3 October 2016 (diff | hist) . . (-64) . . OrthoMCL (→In the Virtual Machine...)
- 14:53, 3 October 2016 (diff | hist) . . (-156) . . m OrthoMCL (→In the server...)
- 14:42, 3 October 2016 (diff | hist) . . (0) . . OrthoMCL (→Using orthomcl)
- 14:41, 3 October 2016 (diff | hist) . . (+18) . . OrthoMCL
- 14:39, 3 October 2016 (diff | hist) . . (+9,536) . . N OrthoMCL (Created page with "! Using orthomcl An important considerations before you start: Orthomcl doesn't run in the server, but in a Virtual machine (VM). I had to request an account in the VM with ...")