User contributions
(newest | oldest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)
- 13:12, 11 May 2016 (diff | hist) . . (+6) . . 6.1 Genome indexing for bowtie (current)
- 11:20, 21 March 2016 (diff | hist) . . (0) . . File:Annotation workflow.tiff (Vpl uploaded a new version of "File:Annotation workflow.tiff": Reverted to version as of 17:16, 17 March 2016) (current)
- 11:19, 21 March 2016 (diff | hist) . . (-110) . . 1. Introduction (current)
- 17:26, 19 March 2016 (diff | hist) . . (+25) . . 5.Identification and masking of repeat elements (current)
- 17:25, 19 March 2016 (diff | hist) . . (+247) . . 5.Identification and masking of repeat elements
- 17:24, 19 March 2016 (diff | hist) . . (+428) . . 5.Identification and masking of repeat elements
- 17:21, 19 March 2016 (diff | hist) . . (+669) . . N 5.Identification and masking of repeat elements (Created page with "'''Repeat identification''' Usually the first step for the genome annotation is the repeat identification and masking. With the term of "repeat" we mean different type of sequ...")
- 17:17, 19 March 2016 (diff | hist) . . (+1) . . 4. Your data (current)
- 17:16, 19 March 2016 (diff | hist) . . (+2,911) . . N 4. Your data (Created page with "For this tutorial you will use as a whole genome a newly sequenced scaffold from xxxx organism. This can be found on the repository at the following path: /ibers/repository...")
- 17:03, 19 March 2016 (diff | hist) . . (+20) . . Genome Annotation (current)
- 16:59, 19 March 2016 (diff | hist) . . (+373) . . N 4.Identification and masking of repeat elements (Created page with "'''Repeat identification''' Usually the first step for the genome annotation is the repeat identification and masking. With the term of "repeat" we mean different type of sequ...") (current)
- 16:58, 19 March 2016 (diff | hist) . . (+1,270) . . N 3. Your environment (Created page with "In the '''SGE''' environment, a scheduler system will queue your jobs and execute them as soon as there are free nodes, based on the resources (threads, memory, etc.) that you...") (current)
- 16:57, 19 March 2016 (diff | hist) . . (+26) . . Genome Annotation
- 16:51, 19 March 2016 (diff | hist) . . (+373) . . N 3.Identification and masking of repeat elements (Created page with "'''Repeat identification''' Usually the first step for the genome annotation is the repeat identification and masking. With the term of "repeat" we mean different type of sequ...") (current)
- 17:58, 17 March 2016 (diff | hist) . . (+112) . . 1. Introduction
- 17:18, 17 March 2016 (diff | hist) . . (0) . . File:Annotation workflow.tiff (Vpl uploaded a new version of "File:Annotation workflow.tiff": Reverted to version as of 17:04, 17 March 2016)
- 17:16, 17 March 2016 (diff | hist) . . (0) . . File:Annotation workflow.tiff (Vpl uploaded a new version of "File:Annotation workflow.tiff": second try)
- 17:07, 17 March 2016 (diff | hist) . . (+14) . . 1. Introduction
- 17:04, 17 March 2016 (diff | hist) . . (+26) . . N File:Annotation workflow.tiff (Genome annotation workflow)
- 17:01, 17 March 2016 (diff | hist) . . (+141) . . 1. Introduction
- 16:19, 14 March 2016 (diff | hist) . . (+28) . . Genome Annotation
- 16:11, 14 March 2016 (diff | hist) . . (+30) . . Genome Annotation
- 16:09, 14 March 2016 (diff | hist) . . (+166) . . Genome Annotation
- 16:04, 14 March 2016 (diff | hist) . . (+1) . . Genome Annotation
- 16:03, 14 March 2016 (diff | hist) . . (+52) . . Genome Annotation
- 16:03, 14 March 2016 (diff | hist) . . (-298) . . 1. Introduction
- 15:58, 14 March 2016 (diff | hist) . . (+19) . . N Genome Annotation (Created page with "1. Introduction")
- 15:53, 14 March 2016 (diff | hist) . . (+1) . . Main Page (→Tutorials)
- 15:53, 14 March 2016 (diff | hist) . . (+22) . . Main Page
- 14:40, 25 February 2016 (diff | hist) . . (-20) . . 9.3 SNP calling using varscan (current)
- 14:39, 25 February 2016 (diff | hist) . . (+1) . . 9.3 SNP calling using varscan
- 15:36, 24 February 2016 (diff | hist) . . (+121) . . 9.3 SNP calling using varscan
- 15:20, 24 February 2016 (diff | hist) . . (+113) . . 9.3 SNP calling using varscan
- 16:30, 22 February 2016 (diff | hist) . . (-1) . . 8. De novo assembly with Velvet (current)
- 13:32, 22 February 2016 (diff | hist) . . (+338) . . N 6. The tuxedo pipeline (Created page with "The RNA-seq pipeline “'''Tuxedo'''” consists of the '''TopHat''' spliced read mapper, that internally uses '''Bowtie''' or '''Bowtie 2''' short read aligners, and several...") (current)
- 11:49, 22 February 2016 (diff | hist) . . (+1,236) . . 8. De novo assembly with Velvet
- 11:45, 22 February 2016 (diff | hist) . . (+345) . . 8. De novo assembly with Velvet
- 11:43, 22 February 2016 (diff | hist) . . (+561) . . 8. De novo assembly with Velvet
- 11:42, 22 February 2016 (diff | hist) . . (-2) . . 8. De novo assembly with Velvet
- 11:42, 22 February 2016 (diff | hist) . . (+190) . . 8. De novo assembly with Velvet
- 11:39, 22 February 2016 (diff | hist) . . (+641) . . 8. De novo assembly with Velvet
- 11:38, 22 February 2016 (diff | hist) . . (+808) . . N 8. De novo assembly with Velvet (Created page with "'''Velvet''' is an assembly algorithm developed for '''genomic assembly''', but it can be applied to '''transcriptome assembly''' as well. A more recent algorithm fr...")
- 16:45, 20 February 2016 (diff | hist) . . (-4) . . 9.3 SNP calling using varscan
- 16:43, 20 February 2016 (diff | hist) . . (+1) . . 9.3 SNP calling using varscan
- 16:40, 20 February 2016 (diff | hist) . . (+272) . . N 7. Using STAR for read mapping (Created page with "'''STAR''' is a fast and accurate read mapper that can handle spliced reads, and can therefore be included in the RNA-Seq analysis pipeline instead of the '''bowtie/tophat'''...") (current)
- 16:39, 20 February 2016 (diff | hist) . . (+31) . . 10. Useful references (current)
- 16:38, 20 February 2016 (diff | hist) . . (+1,788) . . N 10. Useful references (Created page with "Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNAAseq aligner. Bioinformati...")
- 16:37, 20 February 2016 (diff | hist) . . (+6) . . 9.3 SNP calling using varscan
- 16:37, 20 February 2016 (diff | hist) . . (-9) . . 9.3 SNP calling using varscan
- 16:34, 20 February 2016 (diff | hist) . . (+32) . . 9.3 SNP calling using varscan
(newest | oldest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)