Difference between revisions of "1.1 RNA-Seq analysis tools"

Revision as of 20:35, 24 January 2016

The table below provides the tools for RNA-Seq analysis that you will use in this tutorial.

Tool	Type	URLs
FASTQC	Home	http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
	Program	http://www.bioinformatics.babraham.ac.uk/projects/download.html#fastqc
	Manual	http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
Trimmomatic	Home	http://www.usadellab.org/cms/?page=trimmomatic
	Program	http://www.usadellab.org/cms/?page=trimmomatic
	Manual	http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf
Bowtie2	Home	http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
	Program	http://www.usadellab.org/cms/?page=trimmomatic
	Manual	http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf

@@ Line 23: / Line 23: @@
 |Home
 | http://www.usadellab.org/cms/?page=trimmomatic
+|-
+! scope="row"|
+|Program
+|  http://www.usadellab.org/cms/?page=trimmomatic
+|-
+! scope="row"|
+|Manual
+| http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf
+|-
+! scope="row"| Bowtie2
+|Home
+| http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
 |-
 ! scope="row"|
@@ Line 34: / Line 47: @@
-! scope="col" rawspan="2"| Total
-| $1.90
-| brrr
 |}