Difference between revisions of "1.1 RNA-Seq analysis tools"

Revision as of 20:37, 24 January 2016

The table below provides the tools for RNA-Seq analysis that you will use in this tutorial.

Tool	Category	URLs
FASTQC	Home	http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
	Program	http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.6/
	Manual	http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml
Trimmomatic	Home	http://www.usadellab.org/cms/?page=trimmomatic
	Program	http://www.usadellab.org/cms/?page=trimmomatic
	Manual	http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf
Bowtie2	Home	http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
	Program	http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.6/
	Manual	http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml

@@ Line 39: / Line 39: @@
 ! scope="row"|
 |Program
-|  http://www.usadellab.org/cms/?page=trimmomatic
+| http://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.6/
 |-
 ! scope="row"|
 |Manual
-| http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf
+|http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml
 |-
 |}