Difference between revisions of "Main Page"
Ibers-admin (talk | contribs) (→Workarounds) |
Ibers-admin (talk | contribs) (→Slides and Talks) |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 19: | Line 19: | ||
[[Copying files with SCP/WinSCP/Filezilla/Cyberduck]] | [[Copying files with SCP/WinSCP/Filezilla/Cyberduck]] | ||
| − | |||
| − | |||
[[Running graphical programs remotely]] | [[Running graphical programs remotely]] | ||
| Line 77: | Line 75: | ||
[[Filezilla]] | [[Filezilla]] | ||
| − | == Slides and | + | == Slides, Talks and Training Materials== |
| + | |||
| + | Talk on using Containers - [[File:Containers.pdf]] | ||
| + | |||
| + | [https://scw-aberystwyth.github.io/IBERS-HPC-tutorial/ Carpentries Style Lesson on using the HPC] | ||
| − | [ | + | [https://bioinformatics.ibers.aber.ac.uk/training/IBERS%20HPC%20Tutorial%20Recording.mp4 Recording of the lesson above] |
== Bioinformatics Working Group related == | == Bioinformatics Working Group related == | ||
| Line 130: | Line 132: | ||
[[convert_fasta_to_1l_fasta.sh]]´ | [[convert_fasta_to_1l_fasta.sh]]´ | ||
| − | |||
| − | |||
Latest revision as of 12:15, 19 December 2022
Welcome to the HPC Wiki for the Bioinformatics research group at Aberystwyth University. The aim of this wiki is to allow researchers in the field of Bioinformatics in IBERS at Aberystwyth to document common tasks using the High Performance Computing cluster.
Contents
[hide]- 1 Editing this Wiki
- 2 Troubleshooting
- 3 Remote Working Resources
- 4 Super Computing Wales Guides
- 5 IBERS HPC Guides
- 6 Tools to access the HPC (Windows)
- 7 Slides, Talks and Training Materials
- 8 Bioinformatics Working Group related
- 9 Special HPC Workflows
- 10 Other Services
- 11 Best Practice
- 12 Tutorials
- 13 Tips
- 14 Workarounds
Editing this Wiki
Please email ibers-cs@aber.ac.uk to ask for access to edit this wiki.
Troubleshooting
Please read these sections if you are having trouble. There is a chance that you can resolve the problem on your own and ask for help more effectively otherwise. Some (most) of these ideas are shamelessly taken from the stackoverflow help pages.
Remote Working Resources
Copying files with SCP/WinSCP/Filezilla/Cyberduck
Running graphical programs remotely
Super Computing Wales Guides
IBERS HPC Guides
Overview
Using the HPC
Submitting your job using Slurm
Tools to access the HPC (Windows)
Slides, Talks and Training Materials
Talk on using Containers - File:Containers.pdf
Carpentries Style Lesson on using the HPC
Special HPC Workflows
Other Services
Best Practice
Tutorials
RNA Seq on HPC (using Trinity)
