Difference between revisions of "1.1 RNA-Seq analysis tools"
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| + | ! scope="row"| Velvet | ||
| + | |Home | ||
| + | |https://www.ebi.ac.uk/~zerbino/velvet/ | ||
| + | |- | ||
| + | ! scope="row"| | ||
| + | |Program | ||
| + | |https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz | ||
| + | |- | ||
| + | ! scope="row"| | ||
| + | |Manual | ||
| + | |https://www.ebi.ac.uk/~zerbino/velvet/Manual.pdf | ||
| + | |- | ||
| + | |||
| + | |||
| + | ! scope="row"| Samtools | ||
| + | |Home | ||
| + | |http://samtools.sourceforge.net | ||
| + | |- | ||
| + | ! scope="row"| | ||
| + | |Program | ||
| + | |http://sourceforge.net/projects/samtools/files/ | ||
| + | |- | ||
| + | ! scope="row"| | ||
| + | |Manual | ||
| + | |http://www.htslib.org/doc/samtools.html | ||
| + | |- | ||
| + | |||
| + | ! scope="row"| Varscan | ||
| + | |Home | ||
| + | |http://varscan.sourceforge.net | ||
| + | |- | ||
| + | ! scope="row"| | ||
| + | |Program | ||
| + | |http://sourceforge.net/projects/varscan/files/ | ||
| + | |- | ||
| + | ! scope="row"| | ||
| + | |Manual | ||
| + | |http://varscan.sourceforge.net/using-varscan.html | ||
| + | |- | ||
|} | |} | ||
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| + | For a more complete overview of next generation sequencing software tools required for | ||
| + | basic pipelines and for more advanced analysis see: | ||
| + | http://seqanswers.com/wiki/Software/list | ||
Latest revision as of 21:00, 24 January 2016
The table below provides the tools for RNA-Seq analysis that you will use in this tutorial.
For a more complete overview of next generation sequencing software tools required for
basic pipelines and for more advanced analysis see:
http://seqanswers.com/wiki/Software/list
