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- Meeting minutes (1 revision)
- Split multifasta.pl (1 revision)
- 3.Identification and masking of repeat elements (1 revision)
- 6. The tuxedo pipeline (1 revision)
- 7. Evaluating the assembly with ExN50 (1 revision)
- 7. Using STAR for read mapping (1 revision)
- Convert fasta to 1l fasta.sh (1 revision)
- 3. Your environment (1 revision)
- Progressive Cactus (1 revision)
- 4.Identification and masking of repeat elements (1 revision)
- Filezilla (1 revision)
- 9. Using bwa for read mapping and SNP calling (1 revision)
- 10. Useful references (2 revisions)
- SPRINT (2 revisions)
- 26th July 2013 (2 revisions)
- Nodes, Cores, Slots (2 revisions)
- Use scratch space (2 revisions)
- What is a HPC (2 revisions)
- 4. Your data (2 revisions)
- SCW Access Procedures (2 revisions)
- Active Perl (3 revisions)
- SCW Introduction (3 revisions)
- Asking for Help (3 revisions)
- MobaXterm (3 revisions)
- Singularity Containers (3 revisions)
- 6. Construct an expression matrix (3 revisions)
- Submitting your job using Slurm (3 revisions)
- 8. Expression analysis (3 revisions)
- Putty (3 revisions)
- 5. Transcript expression quantitation (3 revisions)
- Java memory allocation issues (3 revisions)
- 1. Read Quality Assessment (4 revisions)
- SCW Training Materials (4 revisions)
- 3. Running Trinity (4 revisions)
- Orthomcl.config (4 revisions)
- 4. Evaluating the assembly (4 revisions)
- 9.2 Read mapping using bwa (4 revisions)
- Getting an account (4 revisions)
- Installing your own modules (4 revisions)
- RNA Seq on HPC (using Trinity) (4 revisions)
- 5.Identification and masking of repeat elements (4 revisions)
- 6.4 Differential Expression using cuffdiff (5 revisions)
- UNIX Graphical interface (5 revisions)
- Array jobs (6 revisions)
- Splitting Multifastas (6 revisions)
- 9.1 Genome indexing for bwa (6 revisions)
- Your disk space (6 revisions)
- 2. Quality trimming (7 revisions)
- Scheduling and queuing (7 revisions)
- 4. Quality control (7 revisions)
