User contributions
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- 13:35, 4 February 2016 (diff | hist) . . (+1,936) . . N 6.2 Read mapping using tophat (Created page with "There are numerous tools performing short read alignment and the choice of aligner should be carefully made according to the analysis goals/requirements. ...")
- 13:23, 4 February 2016 (diff | hist) . . (-1) . . RNA Seq on HPC
- 11:22, 4 February 2016 (diff | hist) . . (+588) . . 6.1 Genome indexing for bowtie
- 11:21, 4 February 2016 (diff | hist) . . (+12) . . 6.1 Genome indexing for bowtie
- 11:20, 4 February 2016 (diff | hist) . . (+434) . . 6.1 Genome indexing for bowtie
- 11:18, 4 February 2016 (diff | hist) . . (+1) . . 6.1 Genome indexing for bowtie
- 11:18, 4 February 2016 (diff | hist) . . (+15) . . 6.1 Genome indexing for bowtie
- 11:17, 4 February 2016 (diff | hist) . . (+1) . . 6.1 Genome indexing for bowtie
- 11:16, 4 February 2016 (diff | hist) . . (+761) . . 6.1 Genome indexing for bowtie
- 11:11, 4 February 2016 (diff | hist) . . (-1) . . 6.1 Genome indexing for bowtie
- 11:10, 4 February 2016 (diff | hist) . . (+465) . . 6.1 Genome indexing for bowtie
- 11:01, 4 February 2016 (diff | hist) . . (+704) . . 6.1 Genome indexing for bowtie
- 10:59, 4 February 2016 (diff | hist) . . (-1) . . 6.1 Genome indexing for bowtie
- 10:59, 4 February 2016 (diff | hist) . . (-1) . . 6.1 Genome indexing for bowtie
- 10:55, 4 February 2016 (diff | hist) . . (+627) . . 6.1 Genome indexing for bowtie
- 10:53, 4 February 2016 (diff | hist) . . (+784) . . N 6.1 Genome indexing for bowtie (Created page with "To map reads to a reference genome, all mapping tools require the genome to be converted into particular structures for quick access and to keep the ...")
- 10:51, 4 February 2016 (diff | hist) . . (-1) . . 5. Trimming (current)
- 10:50, 4 February 2016 (diff | hist) . . (+1) . . 5. Trimming
- 16:16, 27 January 2016 (diff | hist) . . (+12) . . 5. Trimming
- 16:15, 27 January 2016 (diff | hist) . . (+993) . . 5. Trimming
- 16:13, 27 January 2016 (diff | hist) . . (+1,225) . . 5. Trimming
- 16:04, 27 January 2016 (diff | hist) . . (+46) . . 5. Trimming
- 16:03, 27 January 2016 (diff | hist) . . (-6) . . 5. Trimming
- 16:02, 27 January 2016 (diff | hist) . . (+1) . . 5. Trimming
- 16:02, 27 January 2016 (diff | hist) . . (+462) . . 5. Trimming
- 16:01, 27 January 2016 (diff | hist) . . (+3) . . 5. Trimming
- 16:00, 27 January 2016 (diff | hist) . . (+3) . . 5. Trimming
- 16:00, 27 January 2016 (diff | hist) . . (+1,421) . . 5. Trimming
- 15:55, 27 January 2016 (diff | hist) . . (+6) . . 5. Trimming
- 15:55, 27 January 2016 (diff | hist) . . (+109) . . 5. Trimming
- 15:55, 27 January 2016 (diff | hist) . . (+2) . . 5. Trimming
- 15:54, 27 January 2016 (diff | hist) . . (+527) . . N 5. Trimming (Created page with "We will use Trimmomatic for read trimming and filtering, and adapters removal. Let’s see its general usage. To run trimmomatic you need to specify its full path: /cm/sha...")
- 15:26, 27 January 2016 (diff | hist) . . (-7) . . 4. Quality control (current)
- 15:25, 27 January 2016 (diff | hist) . . (-95) . . 4. Quality control
- 15:21, 27 January 2016 (diff | hist) . . (-1) . . 4. Quality control
- 15:21, 27 January 2016 (diff | hist) . . (+280) . . 4. Quality control
- 15:19, 27 January 2016 (diff | hist) . . (-9) . . 4. Quality control
- 15:40, 25 January 2016 (diff | hist) . . (+4) . . 4. Quality control
- 15:39, 25 January 2016 (diff | hist) . . (+3,366) . . N 4. Quality control (Created page with "You are now going to use FastQC to verify read quality. First, you need to create a folder where to store the FastQC output files. Let’s call it Fastqc or any other name yo...")
- 15:35, 25 January 2016 (diff | hist) . . (+75) . . 2. Your environment (current)
- 15:25, 25 January 2016 (diff | hist) . . (0) . . 3. Your data (current)
- 15:25, 25 January 2016 (diff | hist) . . (+167) . . 3. Your data
- 14:49, 25 January 2016 (diff | hist) . . (-12) . . 3. Your data
- 14:47, 25 January 2016 (diff | hist) . . (-2) . . 3. Your data
- 14:17, 25 January 2016 (diff | hist) . . (+1) . . RNA Seq on HPC
- 14:17, 25 January 2016 (diff | hist) . . (-2) . . RNA Seq on HPC
- 14:11, 25 January 2016 (diff | hist) . . (-1) . . 3. Your data
- 14:10, 25 January 2016 (diff | hist) . . (-344) . . 3. Your data
- 14:09, 25 January 2016 (diff | hist) . . (+15) . . 3. Your data
- 14:07, 25 January 2016 (diff | hist) . . (+3) . . 3. Your data
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