Difference between revisions of "Orthomcl.config"
(Created page with "==Orthomcl.config== This is an example of an "orthomcl.config" file that ran in mysql. # this config assumes a mysql database named 'orthomcl'. adjust according # to yo...") |
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Revision as of 17:19, 3 October 2016
Orthomcl.config
This is an example of an "orthomcl.config" file that ran in mysql.
# this config assumes a mysql database named 'orthomcl'. adjust according # to your situation. dbVendor=mysql dbConnectString=dbi:mysql:orthomcldb:orthomcldb.ibers.aber.ac.uk:mysql_local_infile=1 dbLogin=database_user dbPassword=(password_here) similarSequencesTable=SimilarSequences orthologTable=Ortholog inParalogTable=InParalog coOrthologTable=CoOrtholog interTaxonMatchView=InterTaxonMatch percentMatchCutoff=50 evalueExponentCutoff=-5 oracleIndexTblSpc=NONE
