Orthomcl.config

Orthomcl.config

This is an example of an "orthomcl.config" file that ran in mysql.

 # this config assumes a mysql database named 'orthomcl'.  adjust according
 # to your situation.
 dbVendor=mysql 
 dbConnectString=dbi:mysql:orthomcldb:orthomcldb.ibers.aber.ac.uk:mysql_local_infile=1
 dbLogin=database_user
 dbPassword=password
 similarSequencesTable=SimilarSequences
 orthologTable=Ortholog
 inParalogTable=InParalog
 coOrthologTable=CoOrtholog
 interTaxonMatchView=InterTaxonMatch
 percentMatchCutoff=50
 evalueExponentCutoff=-5
 oracleIndexTblSpc=NONE

Note: To get the username and password for the orthomcl database in the Virtual Machine contact the server administrator.