Orthomcl.config
Revision as of 17:19, 3 October 2016 by Angry piranha (talk | contribs) (Created page with "==Orthomcl.config== This is an example of an "orthomcl.config" file that ran in mysql. # this config assumes a mysql database named 'orthomcl'. adjust according # to yo...")
Orthomcl.config
This is an example of an "orthomcl.config" file that ran in mysql.
# this config assumes a mysql database named 'orthomcl'. adjust according # to your situation. dbVendor=mysql dbConnectString=dbi:mysql:orthomcldb:orthomcldb.ibers.aber.ac.uk:mysql_local_infile=1 dbLogin=database_user dbPassword=(password_here) similarSequencesTable=SimilarSequences orthologTable=Ortholog inParalogTable=InParalog coOrthologTable=CoOrtholog interTaxonMatchView=InterTaxonMatch percentMatchCutoff=50 evalueExponentCutoff=-5 oracleIndexTblSpc=NONE
